Python Scientific Stack

A comprehensive Python environment with essential libraries for bio image analysis including numpy, scipy, pandas, scikit-image, matplotlib, jupyterlab, and more. Learn more about the scientific Python ecosystem at scipy.org.

Environment

The Python Scientific Stack is available in the bia-sci-py-stack environment.

To activate the environment, pre-fix your commands with:

pixi run -e bia-sci-py-stack YOUR_COMMAND

Available Tasks

Start JupyterLab

Launch JupyterLab for interactive analysis:

pixi run jupyterlab